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ycdA [2019-03-13 18:43:22]
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ycdA [2019-03-13 18:43:22]

lipoprotein, required for swarming motility
Locus
BSU02780
Isoelectric point
4.71
Molecular weight
39.02 kDa
Protein length
354 aa Sequence Blast
Gene length
1065 bp Sequence Blast
Function
swarming motility
Product
lipoprotein
Essential
no
Synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      
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Categories containing this gene/protein

  • Lifestyles → Exponential and early post-exponential lifestyles → Motility and chemotaxis → Motility and chemotaxis/ other
  • Groups of genes → Membrane proteins

    • Gene

    Coordinates
    299,438 300,502

    Phenotypes of a mutant

  • reduced swarming motility PubMed

    • The protein

    Domains

  • DUF4352 (aa 39 ... 148)(according to UniProt)

    • Structure

  • 4R4G

    • Localization

  • lipoprotein PubMed
  • membrane associated PubMed

    • Expression and Regulation

    Operons

    Genes
    ycdA
    Description
    PubMed

    Regulatory mechanism

  • DegU: activation, DegU-P, PubMed, in DegU regulon
  • SwrAA/2: activation, in SwrAA/2 regulon
  • Abh: repression, in Abh regulon
  • AbrB: repression, in AbrB regulon

    • Additional information

  • term-seq has identified a potential novel regulatory RNA element including an intrinsic transcription terminator upstream of ycdA PubMed
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    Biological materials

    Mutant

  • MGNA-B978 (ycdA::erm), available at the NBRP B. subtilis, Japan
  • BKE02780 (ycdA::erm trpC2) available at BGSC, PubMed, upstream reverse: _UP1_CATTCATTTTTCCTCCTCAA, downstream forward: _UP4_TAAAACACCAAAAGGAAATA
  • BKK02780 (ycdA::kan trpC2) available at BGSC, PubMed, upstream reverse: _UP1_CATTCATTTTTCCTCCTCAA, downstream forward: _UP4_TAAAACACCAAAAGGAAATA

    • References

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